Provide summary of a rmdFilt S3 object
# S3 method for rmdFilt
summary(object, pvalue_threshold = NULL, ...)S3 object of class 'rmdFilt' created by
rmd_filter.
A threshold for the Robust Mahalanobis Distance (RMD) p-value. All samples with p-values below the threshold will be filtered out. Default value is NULL. Suggested value is 0.0001
further arguments passed to or from other methods
a summary of the p-values associated with running RMD-PAV across all samples. If a p-value threshold is provided the samples that would be filtered at this threshold are reported.
library(pmartRdata)
mymetab <- group_designation(omicsData = metab_object, main_effects = "Phenotype")
mymetab <- edata_transform(omicsData = mymetab, data_scale = "log2")
myfilt <- rmd_filter(omicsData = mymetab)
summary(myfilt, pvalue_threshold = 0.001)