Provide summary of a moleculeFilt S3 object
# S3 method for class 'moleculeFilt'
summary(object, min_num = NULL, ...)S3 object of class 'moleculeFilt' created by
molecule_filter
integer value specifying the minimum number of times each feature must be observed across all samples. Default value is NULL.
further arguments passed to or from other methods
a summary table giving the number of biomolecules by number of
observed values across all samples. If min_num is specified, the numbers of
biomolecules to be filtered and to be retained based on the specified
threshold are reported. If, upon creation of moleculeFilt object,
use_groups = TRUE or use_batches = TRUE were specified, the
numbers reported by the summary are based on groups and/or batches.
library(pmartRdata)
myfilter <- molecule_filter(omicsData = pep_object)
summary(myfilter)
summary(myfilter, min_num = 2)