Summary of pmartR Analysis Functions

Provide basic summaries for results objects from the pmartR package.

# S3 method for class 'normRes'
summary(object, ...)

# S3 method for class 'SPANSRes'
summary(object, ...)

# S3 method for class 'dimRes'
summary(object, ...)

# S3 method for class 'corRes'
summary(object, ...)

Arguments

object

object of class corRes

...

further arguments passed to or from other methods.

Value

a summary table or list for the pmartR results object

Author

Lisa Bramer, Kelly Stratton, Thomas Johansen

Examples

library(pmartRdata)
mypep <- group_designation(omicsData = pep_object, main_effects = "Phenotype")
mypep <- edata_transform(omicsData = mypep, data_scale = "log2")

norm_result <- normalize_global(omicsData = mypep, norm_fn = "median", subset_fn = "all")
summary(norm_result)

# \donttest{
spans_results <- spans_procedure(omicsData = mypep)
summary(spans_results)
# }

dim_results <- dim_reduction(omicsData = mypep)
summary(dim_results)

cor_results <- cor_result(omicsData = mypep)
summary(cor_results)