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Apply a S3 tiger filter object to a pmartR S3 object

apply_tigerFilt.Rd

This function takes a filter object of class 'tigerFilt' and applies the filter to a dataset of pepData, proData, lipidData, metabData, or nmrData.

Usage

apply_tigerFilt(filter_object, omicsData)

Arguments

filter_object

an object of the class 'tigerFilt' created by tiger_filter

omicsData

an object of the class pepData, proData, lipidData, metabData, or nmrData usually created by as.pepData, as.proData, as.lipidData, as.metabData, or as.nmrData, respectively.

Value

An object of the class pepData, proData,

lipidData, metabData, or nmrData with specified cname_ids, edata_cnames, and emeta_cnames filtered out of the appropriate datasets.

Author

Lisa Bramer, Kelly Stratton,Damon Leach

Examples

library(pmartRdata)
data("pmart_amide")
to_filter <- tiger_filter(omicsData = pmart_amide,sampletype_cname = "group", test_val = "QC")
amideFilt <- apply_tigerFilt(filter_object = to_filter, omicsData = pep_object)
#> There are no molecules that need to be removed. Returning the original omicsData