Pareto Scaling adjusted object

This function returns a pmart object that has been undergone Pareto Scaling normalization

Usage

bc_pareto(omicsData)

Arguments

omicsData

an object of the class 'pepData', 'proData', 'metabData', 'lipidData', or 'nmrData', usually created by as.pepData, as.proData, as.metabData, as.lipidData, or as.nmrData, respectively.

Value

Object of same class as omicsData that has been undergone Pareto Scaling Normalization as batch effect correction

Author

Damon Leach

Examples

library(malbacR)
library(pmartR)
data("pmart_amide")
pmart_amide <- edata_transform(pmart_amide,"log2")
pmart_amide <- group_designation(pmart_amide,main_effects = "group",batch_id = "batch")
amide_pareto <- bc_pareto(omicsData = pmart_amide)